docs: fix CAUTION callout rendering and list scripts/agents-tools in structure tree

docs/fish-config.md

@@ -39,19 +39,17 @@ A production-grade Fish shell configuration targeting Fish 4.x. It provides:
 - AI session helpers for Claude Code and Antigravity
 - Catppuccin Mocha color theme throughout
 
-  ┌───────────────────────────────────────────────────────────────────────────┐
+> **CAUTION - SESSION LOGGING IS ON BY DEFAULT**
-  │ CAUTION - SESSION LOGGING IS ON BY DEFAULT                                │
+>
-  │                                                                           │
+> This configuration silently records terminal output to `~/.terminal_history`:
-  │ This configuration silently records terminal output to                    │
+> Kitty scrollback on window close, live tmux pane streams, zellij pane
-  │ ~/.terminal_history: Kitty scrollback on window close, live tmux pane     │
+> snapshots on exit, and full paru/yay output. These logs can contain command
-  │ streams, zellij pane snapshots on exit, and full paru/yay output. These   │
+> output, file contents, and secrets printed to the terminal. Nothing leaves
-  │ logs can contain command output, file contents, and secrets printed to    │
+> your machine, but the files persist locally.
-  │ the terminal. Nothing leaves your machine, but the files persist locally. │
+>
-  │                                                                           │
+> - Disable all logging with: `set -U __fish_config_op_logging off`
-  │ Disable all logging with:  set -U __fish_config_op_logging off            │
+> - Prefer a menu? Run the interactive picker: `config-toggle`
-  │ Prefer a menu? Run the interactive picker:  config-toggle                 │
+> - See Section 7 (C5 - Logging and Capture) for the full breakdown.
-  │ See Section 7 (C5 - Logging and Capture) for the full breakdown.          │
-  └───────────────────────────────────────────────────────────────────────────┘
 
 The configuration is split across:
 
@@ -83,6 +81,7 @@ The configuration is split across:
       fzf.fish                FZF Catppuccin theme and key binding config
     scripts/
       clean_progress_log.py   Strips paru/yay typescript animations to clean static logs
+      agents-tools/           AGENTS.md version-bump script and git hooks (wired via core.hooksPath)
     docs/                     Offline documentation and compiled man page
       fish-config.md          Primary source manual (terminal-readable)
       fish-config.1           Compiled man page (auto-generated by CI)