The local core.hooksPath override set by agents-init shadowed the user's
global hooks (ggshield, Git LFS) since git honors only one hooksPath. Each
shim now execs the global/system hook of the same name after running
version-bump, so global hooks still run after version increment. Bumped the
agents-tools version marker to 2 so existing AGENTS repos refresh.
- quiet mode now outputs one summary line only when something actually changed;
idempotent re-runs produce no output
- add -v/--verbose flag as an explicit alias for the default verbose behavior
- gitignore helper output captured to detect changes without printing in quiet mode
- drop eager "Initializing…" header in favour of end-of-run conditional summary
- Strip leading / from pattern before git check-ignore so root-anchored
patterns like /AGENTS.md are checked as repo-relative paths (AGENTS.md)
and correctly match existing rules — fixes duplicates on every run
- Rework helper to accept multiple patterns and write them as a single
labeled block with project-style header/footer comment rather than
appending bare patterns one at a time
- Move gitignore calls out of per-plug loop in --plugins mode so all
three docs/ patterns are checked and written in one block
- Remove 5 duplicate bare entries left in .gitignore by the broken runs
- Move plugin dir creation into --plugins mode (not 'Always') so --agents
alone no longer creates empty AGENTS/plugins/ dirs
- Wrappers (claude, agy) now call plain agents-init (both modes) so plugin
dirs in docs/ are migrated on the first AI launch, not just --agents
- Rewrite --agents CLAUDE.md logic: detect which root files are real vs
symlinks and handle all four cases (both/agents-only/claude-only/neither)
without ever losing content
- AGENTS/CLAUDE.md is now its own file in AGENTS/ (real file when both
existed, symlink → AGENTS.md for single-source cases)
- Root CLAUDE.md now points to AGENTS/CLAUDE.md instead of AGENTS/AGENTS.md;
readlink checks auto-fix existing symlinks with the wrong target
- New empty setups get AGENTS/AGENTS.md pre-populated with the agent
directive warning editors not to write through the root symlinks
rootiest
