- Move plugin dir creation into --plugins mode (not 'Always') so --agents
alone no longer creates empty AGENTS/plugins/ dirs
- Wrappers (claude, agy) now call plain agents-init (both modes) so plugin
dirs in docs/ are migrated on the first AI launch, not just --agents
- Rewrite --agents CLAUDE.md logic: detect which root files are real vs
symlinks and handle all four cases (both/agents-only/claude-only/neither)
without ever losing content
- AGENTS/CLAUDE.md is now its own file in AGENTS/ (real file when both
existed, symlink → AGENTS.md for single-source cases)
- Root CLAUDE.md now points to AGENTS/CLAUDE.md instead of AGENTS/AGENTS.md;
readlink checks auto-fix existing symlinks with the wrong target
- New empty setups get AGENTS/AGENTS.md pre-populated with the agent
directive warning editors not to write through the root symlinks
rootiest
