Creates the vault repo on demand, reusing the AGENTS version bumper and
hook shims, then links the current project's live memory directory into
its slug-keyed entry and commits.
Because the live directory becomes a symlink into the vault, backup and
restore are the same operation: a cloned vault relinks itself on the next
run in each project, with no manifest and no batch restore step.
Also fixes _agents_repo_install_tools' progress messages, which hardcoded
the literal "AGENTS/.agents-tools/" even for callers writing elsewhere:
they now name repo_dir's own basename, so agents-vault reports its own
directory instead of a false AGENTS/ path.
Renames _agents_init_install_tools to _agents_repo_install_tools now that
the vault shares it, collapses the two duplicated root-symlink blocks into
one loop, and routes the auto-commit through _agents_repo_sync so a failed
rebase can no longer be committed as conflict markers.
rootiest