Word-level diff of every manual entry against its generated counterpart
surfaced 546 tokens present in the manual and absent from the header —
losses reconcile.py missed, because it compared description length and
these headers are longer overall thanks to ARGUMENTS/RETURNS.
Merged the substantive ones (546 -> 202 residual tokens, the remainder
being synonym drift). Notable real fixes:
- git-clean: -f/--force was missing from ARGUMENTS entirely
- pkg: per-package-manager query table
- qc: cli-role rationale, role paths, --role passthrough
- config-help: site URL, xdg-open, man page path, case-insensitivity
- agents-init: idempotency, .gitignore paths, upstream pull, wrapper callers
- smart_exit: exit-builtin wiring note, $SCROLLBACK_HISTORY_DIR
The manual's claim that claude/agy pass `agents-init --agents` is stale;
both pass `--quiet` (full setup). Header wins, manual dropped.
Records each documented function's manual category in its own header, so
Section 5 can later be generated from source instead of hand-maintained
alongside it. Values reproduce the current grouping in
docs/manual/05-functions/ exactly; no documentation changes meaning here.
Four functions are skipped because they have no header at all yet
(branch, fc, gitup, sudo-toggle); they get one in the merge that follows.
Replace all ad-hoc inline comments between license headers and function
declarations with consistent SYNOPSIS / DESCRIPTION / ARGUMENTS / RETURNS /
EXAMPLE blocks across all 99 project-owned functions/ files. No executable
logic, variable names, or exit codes were modified.
Completes Task #6 from AGENTS.md (Retroactive Function Documentation
Standardization).
Adds a robust `scrub` utility function to safely and recursively clean
up common OS metadata, development caches, editor artifacts, and slicer
cruft using `fd`.
Features:
- Hierarchical deletion fallback system: checks for a custom `rm`
function, falls back to `trashy` (trash put), then `trash-cli`,
and drops to standard `rm -rf` as a final measure.
- Safe `-d/--dry-run` modes to preview matched targets.
- An advanced `-a/--aggressive` mode for wiping heavy project caches
(node_modules), local logs, and custom AI runtime config histories.
- Full flag validation and colorized help menus.
rootiest