rootiest dd28fc784b docs: restructure customization and components reference into nested directories

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01-c1-command-shadows.md

docs: restructure customization and components reference into nested directories

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02-c2-startup-side-effects.md

docs: restructure customization and components reference into nested directories

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03-c3-key-and-environment-overrides.md

docs: restructure customization and components reference into nested directories

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04-c4-terminal-and-tool-integration.md

docs: restructure customization and components reference into nested directories

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05-c5-logging-and-capture.md

docs: restructure customization and components reference into nested directories

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06-c6-greeting-and-first-run-ui.md

docs: restructure customization and components reference into nested directories

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index.md

docs: restructure customization and components reference into nested directories

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